PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g14410.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 627aa    MW: 68219.5 Da    PI: 7.1031
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g14410.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.95.2e-08334383156
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      s+y+GV++++++gr++A+++d      + +    +     +Aa+a++ a++k +++
  Vradi06g14410.1 334 SQYRGVTRHRWTGRYEAHLWDN-----SCKKEGQTRKG-RQAARAYDLAALKHHQH 383
                      78*******************2.....12223344444.9***********99875 PP

2AP2323.1e-10380423955
              AP2   9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Vradi06g14410.1 380 HHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 423
                      6789******988532...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-5334379IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-6334382IPR016177DNA-binding domain
CDDcd000188.51E-22334433No hitNo description
Gene3DG3DSA:3.30.730.104.6E-4335380IPR001471AP2/ERF domain
PROSITE profilePS5103218.518335431IPR001471AP2/ERF domain
SMARTSM003803.3E-29335437IPR001471AP2/ERF domain
PRINTSPR003672.9E-6336347IPR001471AP2/ERF domain
PfamPF008471.0E-5380423IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-14381433IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-15381431IPR001471AP2/ERF domain
PRINTSPR003672.9E-6413433IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MKSMNDGNTD DGNNHNWLGF SLSPHMKMEI TSSADPPHHH HHHFYHHPQV SAAAAPCNTV  60
PTGFYISPSH LNPSGICYGV GENGAFHPPL AMMPLKSDGS LCIMEALTRS QTQEGFVGLV  120
EVMVPTTSPK LEDFLGGASI GAQDYGRHER EAMALSLDSA YYSSQNAEPE ANRGHPSSLG  180
LLSDPFRQQT HPYYSGLGIY QVEEEAKQPH VTVCSSQMPQ VVEEGVTCFK NWVPTRGYSS  240
TQQNPEQQQV NNSSGMGEGH GASGNAGVGC GELQSLSLSM SPGSQSSCVT VPTQISSSRT  300
ESVAGDAKKR GSAKLGQKQP VHRKSIDTFG QRTSQYRGVT RHRWTGRYEA HLWDNSCKKE  360
GQTRKGRQAA RAYDLAALKH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDVAAIK  420
FRGVNAVTNF DISRYDVERI MASNTLLAGE LARRNKDSEP RTEAIEYNGV SSQHEAETVN  480
NNENNEKGSS DWKMSLYHQQ QQQQSNNNCD MKTMKCGNYR GSAFSVSLQD LIGIDSVGSS  540
QAMIEESTKI GTHFSNPSSL VTSLSSSREG SPDKTGPTML FPKPPVGSKV VTSPIANGVS  600
VSSWFPTQMR PVSMSHLPVF AAWSDT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014505232.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
SwissprotQ389144e-99ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A0L9V1B30.0A0A0L9V1B3_PHAAN; Uncharacterized protein
STRINGGLYMA14G10130.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-78AP2 family protein